NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209617_10017145

Scaffold Ga0209617_10017145


Overview

Basic Information
Taxon OID3300027720 Open in IMG/M
Scaffold IDGa0209617_10017145 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3205
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008351Metagenome / Metatranscriptome334Y
F013610Metagenome / Metatranscriptome269N
F018161Metagenome / Metatranscriptome236N
F023784Metagenome / Metatranscriptome208N
F025270Metagenome / Metatranscriptome202N

Sequences

Protein IDFamilyRBSSequence
Ga0209617_100171453F008351N/AMDSDHEAELPEKCSDELVHTVRESVEKLFSLVDTEFSRPSASDEEEDFSLLKQICEAKADILKDNPYWSAFDHTTLLSTKALGRLDWLDAEGPWDGVRNIENYKVFKEALRELRECNPNWKLEEQEIIRRVRCSYCGTVKSIPDKKTLLENNPEKQEVNSL
Ga0209617_100171454F018161N/AMSELESKPDYSARQQVVRKIYRILSRINCIPPFEDTINFRHLQRLHELMRELRSLDPEYPVTDIVQTSELNILKNLDRIQTTRSWDDAGNKLVYINIQGEISKIRKFHPDWDVDLDCIYRYHICRCLRCKSEGFLCTQHVLDSSNEISSPQSDTSDEGKPFPALNSKH
Ga0209617_100171455F013610N/AMETSTSTDNPEKKLEIEKQKTLVADLFSTLNLVFTQTKLGVERSNLLLRAIHQFKTDILKIDPYWKLISWPHITIGRIFCSIDAIVIEDKWDCDTNKFLFNEIKDAMMKLRRFNNYWQLTEEDAITYTGQVSAGDKTRGYRDTLEELERLIIEV
Ga0209617_100171456F025270N/AMNQETLENGNTLRSLRVRQATKVSKHKLKRQWQKIAAEALAKLNDVKTNEINTSEHNIAVFNEIFIKIQELRRLDPEKEINQYALAQAVITKYNCSLCLPTDDSDYEYEPTNS
Ga0209617_100171457F023784N/AMNMNQLIAKLTSFSQEGRKISQDNASRRILKVKELLETRNLCVVDRPSLRIRASKEDDPPAILSIAEEKAIARATIRLLELRSKGESRIHELLESLDTEKTSGDLANRAILEDIFLVIKDVRRILPNKCLGGKHYVNFQIEPVGTTEEENEILKRALEKNTFLSKEEREYLFSIVKVESVDAKYSTLKTPKYLLPRPEIAPAVPSTSANHN
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