NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209617_10018651

Scaffold Ga0209617_10018651


Overview

Basic Information
Taxon OID3300027720 Open in IMG/M
Scaffold IDGa0209617_10018651 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3053
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F003422Metagenome / Metatranscriptome487Y

Sequences

Protein IDFamilyRBSSequence
Ga0209617_100186514F003422N/AMTNELVSSKYTFVCDPNECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLLSVEHATIAPTTQTKEDKMEETTAGTVNDLLTPYQPDMLVTYKKISGYSDTEFLTDKVRNIEWELHNSRTNSKIASVLTNKIASVKDIIVEAYSDSDDQETLRSIAEALEIELTRDVEWSATIEVSGTIQLDLLADSDTDIESEIYDNLYVDSQNGNIEIVDTEVCNVREN
Ga0209617_100186515F000311GGAGMYFELTAPDVLSMQRAYWDAEITGLDPEAMSPLTFNVGTGSIEKVSRIRDKYNLKESYWSDKESTGY
Ga0209617_100186518F000450GGCGGMGDRANFGFVQPNGNTIVLYGHWAGHNMLAQLAEAAIKAQGRWSDPSYATRITISQMIGEGWAMETGWGLHVNEIADNEHKIPVIDFQQQTFSLHEEAPYADLSNKVRGMKNEAMFTQDLSNFCEKYSDQLVRV
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