NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209617_10057280

Scaffold Ga0209617_10057280


Overview

Basic Information
Taxon OID3300027720 Open in IMG/M
Scaffold IDGa0209617_10057280 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1627
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013634Metagenome / Metatranscriptome269Y
F031456Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0209617_100572801F013634N/AMSKCNSNQDTMAIQLAPLLGAGLGALQQSKIEKAMAGEKTYTRPKTIFGKLIGGISGRTAAAEASAGTKTEPINSSVMNSLQPSAKSTPITGGFSFGGEATKRSYLPFAIVAAVVAAFYF
Ga0209617_100572802F031456N/AMALIGSFPASASAVFNLDFLPEKLLVQSTSWPDQSLSSFSVVTSGIQLFSITNVDRLTALAKFDSGAILQDPNLTPSNQDNQTAQYLRLATGRVNKATTITGTNSAGAARNVYAASTSISDIARRAVEQSINPSANATFSNFEALIFNPANILRAQITFANGFSDEYTPEELAALYANYHVSDSGGYLQGLLCIDSDSGAGLISQVVIFNSSSASTVVLKTDYVQV
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