NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209178_1035354

Scaffold Ga0209178_1035354


Overview

Basic Information
Taxon OID3300027725 Open in IMG/M
Scaffold IDGa0209178_1035354 Open in IMG/M
Source Dataset NameAgricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1579
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.8834Long. (o)-83.4195Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003547Metagenome / Metatranscriptome480Y

Sequences

Protein IDFamilyRBSSequence
Ga0209178_10353541F003547GGAVLAPAHVGHLAMLRSLIRDGVAEGSFDRALAVDTPGAVEFFARLKRALVSGYFVEEDPKTGQVQSVPVPGYVFWPDGRNSGTPPVGFGLFRALDGGYELWLAGLEFERRGDGHGRALLEALLATPPGKKTWVVRIPRGSRYAGVVQHLLAPFDFDHAGDTTRLRWFVRRSAPAAVTARVSAVLAGHPAPN
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Biomedical Sciences Research Center "Alexander Fleming"
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