Scaffold Ga0209178_1113761

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209178_1113761

Scaffold Ga0209178_1113761

Overview

Basic Information
Taxon OID	3300027725 Open in IMG/M
Scaffold ID	Ga0209178_1113761 Open in IMG/M
Source Dataset Name	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	913
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	33.8834	Long. (^o)	-83.4195	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078568	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209178_11137612	F078568	N/A	MAGWNMDKPLNEVPGFVYVKNLSTAFVVNKHGEPIVFTEEQAEMNWLFEWILGYERHHLRSLPLVLQIRKEARAVEPLETRSKAQRIATASKDVKTMKKPPSTRRKFDRRPSHTKGGARRQLIGEQIGQTRILQLRVFQTQQEAEKWAGERDGRRFRFATIGSVGWTRALDEEMKVVQHSQCTPLSSNG

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.