NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209178_1135754

Scaffold Ga0209178_1135754


Overview

Basic Information
Taxon OID3300027725 Open in IMG/M
Scaffold IDGa0209178_1135754 Open in IMG/M
Source Dataset NameAgricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)842
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.8834Long. (o)-83.4195Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058464Metagenome / Metatranscriptome135Y
F079242Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0209178_11357542F079242GGAGVTADRFGDSQDGWRDLVRLATERTEEYVQLWEGAAAKFKDSSYRSEDLLDDWFSFCGKAVRDMTAGAALLWTAGVRDVPRQAATRDDRPGDSGP
Ga0209178_11357543F058464GGAGGMARDEDLADATTASDSATWFAGYSARFAKTTEDTARASVTMADRWARRSLADGDWTVDSVTADVIADWEEMTPLMGRWLDLWLEALQQPIRGARRRDG

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.