NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209328_10001439

Scaffold Ga0209328_10001439


Overview

Basic Information
Taxon OID3300027727 Open in IMG/M
Scaffold IDGa0209328_10001439 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6558
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004003Metagenome457Y
F004186Metagenome449Y
F004349Metagenome / Metatranscriptome442Y

Sequences

Protein IDFamilyRBSSequence
Ga0209328_1000143910F004186N/AVLVAALAAGCGVPTPLAPASAKEVLTKPQQSSLKEAHFKVTGKIADNNATIDIVGDGAFVYKPKLAGRFQFTTTVSGQTATIKEISVNGMNYGLTPASPKWVASPSTMGIDPNAFAGKSDQKYIGEENLPQGKAWHVTAKDDGGNAYDAYIRESDGYPIKYVETQGGGQNITLTFDQYNTGEMIAAPPADQIQAG
Ga0209328_100014398F004349AGGAVKTRTWIVLPISALVLAACGSSAAAKPPTAQEILAKPDAANVKDGHFSLVAHIVSGNIAFDATGEGIIVVKPQQASRFTMLTTIAGQPLKFEEIIIGGKEYDLAPDNPRWTVKPSTNSSNPSSFKGTNATYLGEVTLAQGKAWHVKATDDSGNPFEAWVRESDGYPLKYASTMQGSTFTATFDRFNTGQTVSAPQASDIQQ
Ga0209328_100014399F004003GGAVIASPKRIATAIVAVGVLAGCGGPGTPLAPPTAKDILSRPNQANLKDAHFLVTGKGSTQGSVVDLNGDGTIVYKAPGAGHFKFHTAVAGQQITVDDISINGIDYTLTVPGNGKWTARSTSSGFGPGSFAGASEFTYVGEESLPNGKAWHAKAKDKDGNQFDGWIRESDGYPLKYQITQASDQGTNALTLTFDKYNTGESITAPPASQVVQG

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