NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209248_10032036

Scaffold Ga0209248_10032036


Overview

Basic Information
Taxon OID3300027729 Open in IMG/M
Scaffold IDGa0209248_10032036 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1635
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014661Metagenome / Metatranscriptome261Y
F017358Metagenome / Metatranscriptome241Y

Sequences

Protein IDFamilyRBSSequence
Ga0209248_100320361F017358N/AMYPETDAISNIISATVTVVFKRRLIDRVLRLWTDMARGQGFPRLDQIEPSKLGIDWANCLVIAVQSP
Ga0209248_100320363F014661N/AMVVAFRGRDLVMPNGIDGGEMLAWASADERLAQHLELGSDAKAFWKDGFLLYTLWATGDFCGMIPSGTRERLYHYTRTGFYQFLRDHGSQISPKEGSRRIKVFRAYNRFGVTIIRMVEKAGINKAFAAIPYVQDDTINDVLRLCIKTPYYRLLPALQKAYPRSDCRRRSGRRSKEELRRAAERRAVQVLVDNENGMIGDPGIFVPRQYRQHAEDELRAQEVFEIAMRRLGADDRDAFFMQVVELVANTWLTKDDRQAVEQLLSEQRY
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