Scaffold Ga0247833

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0247833_1047009

Overview

Basic Information
Taxon OID	3300027730 Open in IMG/M
Scaffold ID	Ga0247833_1047009 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Restricted
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components
Scaffold Length (bps)	2386
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location Name	Spain: Castile-La Mancha
Coordinates	Lat. (^o)	39.9879	Long. (^o)	-1.8737	Alt. (m)	Depth (m)	8
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042871	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247833_10470096	F042871	N/A	IRSQTKGEEHMKKKATKKSPSMTLVQTEDLNKLLNGAWQISNDLDELSYRFDEVSQLLDSVHIDFDDGKAACFFYLSERLYNENKKQLEEILHRLSQVLWEARGIRG

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