 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027730 Open in IMG/M |
| Scaffold ID | Ga0247833_1061514 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1912 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Spain: Castile-La Mancha | |||||||
| Coordinates | Lat. (o) | 39.9879 | Long. (o) | -1.8737 | Alt. (m) | Depth (m) | 8 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F046819 | Metagenome / Metatranscriptome | 150 | N |
| F047479 | Metagenome / Metatranscriptome | 149 | N |
| F080837 | Metagenome / Metatranscriptome | 114 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247833_10615141 | F080837 | N/A | MMNKKTNNKKHEFFPKMMTTEVLKPYLKEAKRVGYTVKGSAREGFITVVTDECANHPAGEVVMRGIKKPGVNVWIMGFNTLYWQEPSVAECLAESKWYAEMQGASK |
| Ga0247833_10615146 | F047479 | AGG | MMKNKQYLQIDLYNGKSKWISKKDFLLSTVGDEYDGKDSKGYFMTYKLDDGTVEKEYYNWKDNWNDIKKTNTHTIYFGEECMLIDFTNKGTK |
| Ga0247833_10615147 | F046819 | N/A | MLRTLQKCYSMTKGAYMNKFKPYTQTDVVSFYKELVKRWADDQLDQLADYPITRRKIALEELIESSLEVFKSDIVDEIRSRKLSYLVD |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |