NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1000053

Scaffold Ga0209297_1000053


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1000053 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)93676
Total Scaffold Genes135 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)106 (78.52%)
Novel Protein Genes17 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Associated Families17

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000441Metagenome / Metatranscriptome1136Y
F000852Metagenome / Metatranscriptome860Y
F000980Metagenome / Metatranscriptome814Y
F001043Metagenome / Metatranscriptome794Y
F001125Metagenome / Metatranscriptome769Y
F001280Metagenome / Metatranscriptome732Y
F003408Metagenome / Metatranscriptome488Y
F007921Metagenome / Metatranscriptome342Y
F008245Metagenome / Metatranscriptome336N
F012456Metagenome / Metatranscriptome280Y
F014140Metagenome / Metatranscriptome265Y
F031497Metagenome / Metatranscriptome182Y
F042904Metagenome / Metatranscriptome157Y
F066776Metagenome / Metatranscriptome126Y
F099281Metagenome / Metatranscriptome103N
F105192Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_1000053108F003408AGAAGMPELVQTFKSMQKTESEKRKFLASIQGVDLNESSNENKGGSSFEDVKRRALGVTASADDVVSLQGSFASEAGFGIGAGLGYSIE
Ga0209297_1000053112F012456GGAGLDSSVALLQTASGLERPMAGNKPGIIKDSSVAQISAFLYYQASVLGKLTANKAFQSLFKQTIFNQINKDFGDYIDSSARVKPTALHHVYEWNKTGQETSRLFKLNRMDADGLSFRVTYDFQLSKSSVPSKNKKQRKKYVFATKASVMEAGMPVIIRPRSAERLVFELDGITVFMPKGSSVTVKSPGGRASSNQFRLHYGRYFGGQLVNNSIKASGFQNIFNAKMSKALDTPANIRKVQYSFTAGKIRLEADMELQAAFGGAL
Ga0209297_1000053133F099281GGAMATVNKNFKVKNGLNVAGAATFDAAVNVENLVLNSTPLAFDSSTGRLKIQIGGIWREIALLTDATEDPTALTFMDIGLAIDYDGKPVYSVFANGVNTVGTKFADGGSYTTDTFSYTFDSGTIA
Ga0209297_100005314F000441AGCAGGLSTQCLKKRKKTKMKMSDTYLNDQLNTAQKLLWGGSETENIEAHNIIAKLISDRIEQADL
Ga0209297_100005315F000852GGAMATKREYLKQQGITVGVRGRFSGAAKVALAEAEKNGVKFTAETPANKAK
Ga0209297_100005316F031497AGGMKKTEEIKVAESLVNLMDDHWFSPTIFGHYLAEQPLYTLDRIMEMIVSVISEQAKMYEFYLNRGTSTEGLLLANELNECIKAYQESNELHHLKLPSRYFKVPKREEPVRPNIFGWKEEEDPFN
Ga0209297_100005326F007921AGGAMIDWLVNRIFRWDPLRKAVFDEVRLYQSVDRSLWEYEKERPTNLTWSEGDRWYGWTYNINSKRYYFDDIGNKSLMGLWEDQWLREADDNKA
Ga0209297_10000533F000980N/AMSVGACIILDMTKYQKYTWVCTSDCDALIEYTFKDGYGWPAGVMDLTCRCGTDCTLLSVEDATIPYTDTPLTKEETMEESTSAVTVPDTYNPNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNARQAQKQNGVYQDKINTVKDIITEAYEDSDDKDTLRAIAEALSIELVREVLFTATLEVSGTYTYNILDSDYELDLDSEVTDALYADSNNGNIQIDDTEVCHVREA
Ga0209297_100005338F001280GAGMCYECGCETVGSNKGASPITIVDVSRDGESGLTLGMVSTPEQTRQFINE
Ga0209297_10000534F000311GGAMYFELTAPDRLSLEMAYWDAQIIGLDPEFMPPLTFNVGTGSIEKVSRIRDKYNLKESYWSDRESTGYKER
Ga0209297_100005346F042904N/AMAELTVMDEIIGEVAEDLYNKWVSAMPDDEKNQHAFSAMSKNAHETTLFIIQEFMNKFNAAAEELKDK
Ga0209297_10000535F001043AGGAGMSDYKDGFEDGYKFAREELMEKLAEIDIADIDSWILDRLAEMIEGGNL
Ga0209297_100005351F105192N/AMNITLNQILLTLFAASISGVFTAWINSRRLKKDKAVQAADKAHDQLLLEIKDLQIKLYKLEKDLMEWKDKYFEAIQELIKVKSELEGTMLRLTHIEMHEDHFNDL
Ga0209297_100005355F066776AGGLLHLTEKGVEIFIKRSQTKSQESFWNNYDLVIWQKDNGGYTSTNGMYRQNAWGKSEKFSVNREGNWKLPKKYVKYFK
Ga0209297_100005358F014140N/AMNKYRIKLDIEVEVEAFNTEDASEYIHDIFNIDDEIKKINVVKISPINH
Ga0209297_10000537F001125AGGCGGMGDRANFGFRDSKENIVFLYGHWAGHRMLENLADAVQIAHPRWNDEAYATRITISQMIGDEWASETGWGISVNQLADNEHKVPIIDWKNKTFTLMEEDLQTVVFSTSLEAFVAKYCSQLSMV
Ga0209297_100005383F008245GAGGMTEDKNTLQLISDITEFNDLHEYMKDEHLDKALAIVVKILMNPEVPSAKAPVLIMELQAMSTKFGVMASVYSTIAKDKAGTVNNNKKNVYYSVKESIDKLVDALKYVVRYNS
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