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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027733 Open in IMG/M |
| Scaffold ID | Ga0209297_1000092 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 61414 |
| Total Scaffold Genes | 101 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 82 (81.19%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006261 | Metagenome / Metatranscriptome | 377 | Y |
| F008607 | Metagenome | 330 | Y |
| F011482 | Metagenome / Metatranscriptome | 290 | Y |
| F014841 | Metagenome / Metatranscriptome | 259 | Y |
| F027488 | Metagenome | 194 | N |
| F041730 | Metagenome | 159 | Y |
| F054812 | Metagenome / Metatranscriptome | 139 | Y |
| F068570 | Metagenome | 124 | N |
| F103142 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209297_100009231 | F014841 | N/A | MSEENKRPSLIDDALAEIGRIAFLDPAICTGWVLVSEWMGEGEKEYWTLTLADDDNPDWRHKGLVHHALATWEANDDIGFKDDPKD |
| Ga0209297_100009243 | F103142 | GGAGG | MSLDYKGFEWGNRITSDEDSVDRFLHEGLVPESPSIGDLHGAAEWLATYAAETAEDAQGWANVVAFLILTAESKQKRSAVAQAKREFAKEKGIPVSQVRINRNY |
| Ga0209297_100009253 | F054812 | GGAG | MDTNEVNQKFDDIIQPKVINQIVKQRREPAKFPELRYLWGITGLATFALLMLAAIVSTFLEGL |
| Ga0209297_10000927 | F041730 | AGGAG | MALPTSLSTATIVGTYVDLIGNPVRGSLTFAPQTILKETTQNIIIMPVHIVKTLDATGSFTITLPVTSDTDVAPQPFIYDVTENFSGGREFQVALPLSVAGTTQNLADLLPAVDSTTAASYVTTDQYQALLTRYTNAEGIRVIVIDAEDYEANAQVYAAAATAAANELASFTVKSLLFMG |
| Ga0209297_100009273 | F027488 | GGAGG | VSIRWITKVWSDSPYDGTRLLIHLALADISHDDGRFFASQKMLAAKGRCSIEYVRKVINQMVEEGHIKIISKGNSRGKATTYQLLWKKLPNSVGEALPIEDDELPNSDTPHSPTLEVSLPNSTPYHPSYTSVLSTTKSDETAVAVVALSEVVAKRWWEKQRVKPLGKGAWHSLLQITKAAEVRGYSEEQIELALDYIGTVPTMRQMDLVLRGVGVKTKHESGAIRAIELSEKLRNESS |
| Ga0209297_100009277 | F011482 | GGA | MAAEEIQPTLGEVMRRLDDLTMEVKQMNLNVGQTYLRKDVYDADTERFAQAMDHITDRLEKMESRSEWVIRTVGALFITTVVGASMYLGQSIGI |
| Ga0209297_100009282 | F006261 | GAGG | MAVLSSGYTTTEPIQIANAGVWSFTAVQSPTIRVTQLRVQQPLNSSVVESYGVFKPLGASKTVVVATSIYGIDGSYEFTTQGETEWAALYPVLTYQGILHVHDPLGRQKYVRFVDRTWTEVGDINNLIRNAKVNYFEVEAP |
| Ga0209297_100009291 | F068570 | GGA | MEETQQPMSSSDVGNATGSSSKVQRVRGVSAAPAVNPKINQDEFVSALDELVGVWKVQDGCSVRRITNELPEPARTKFKEALMNEKINSARLVELLATFDIAVGSDVMRRHRRRLFGKDGCKCPIES |
| Ga0209297_100009294 | F008607 | AGGAG | MADAIYSKVAEFMTDSVVFTAKTSVDKYNKPTFSGDTTVVGRLIYDTVKSKDVQGIEVVDVGRFITKGPATTITVSHKMVIGADTFTVNAVDNIADENGAHHTVIRFGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |