Scaffold Ga0209297

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1000336 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027733 Open in IMG/M

Scaffold ID

Ga0209297_1000336 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	31078
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (27.27%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

31078

Total Scaffold Genes

44 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (27.27%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003714	Metagenome / Metatranscriptome	472	Y
F026860	Metagenome	196	Y
F074557	Metagenome / Metatranscriptome	119	Y
F076091	Metagenome / Metatranscriptome	118	Y
F082694	Metagenome	113	Y
F085382	Metagenome	111	N
F101160	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100033610	F082694	N/A	MGTISARQILEAVIASHLSDQTELTGVSIYTGDGADTNVLPKLIVLCDSARTPNDLPQGLGNYMCGTRVTIFSSADDNTLVEHRARCAAVAGAMQDLTAIKAKFVAGGDAACYDVTPQSEDEGVNERSWASVMSYDILIVVNPQA
Ga0209297_100033612	F085382	N/A	MSIYDTFLPDFQGLLADIGVPATVGSDLFLVGLSRPMNTPKFDSGGFTDQKMWTVRFAAATAPWTASDGRVGGQVATLASGVPIAALGEGKKLTVNGQVLRIKGQSYKKTSAVIELDCIDDNQ
Ga0209297_100033617	F076091	N/A	MLGIYVGVDEDTLLQYKAEALADLGKAVTSYSDSGTSVNKQFGMPPAARIQEINFALSRIDSSRYGGAHTSVQINWSSRVDL
Ga0209297_100033626	F003714	N/A	MPDANFQFVQSVTFAGRVIPLTKPIAAFNARRLQRILPVIAALNAAGKSQEEAAKFLGTTVGTLRKWLAITDTPWVNLKRRGKYKTNA
Ga0209297_100033631	F101160	AGG	MTTPYNSHHSVNDMNDLIDKYVPVREAALQEHYMKAAETRALLKRLGCWPDKPSRSPETRGKKPKNGKLASEIGRDAYHWAYANKATYTEAAERFRVSSDAIHSYRQYRKLPKLRTL
Ga0209297_100033633	F074557	N/A	MTLILALSAALLVSEAIPEAVVQAVEQVESSGRGSKTPNGDGGKAIGCLQWHSAAWSDCSAVRLKAGLAVYPYSDAKAPIRAREYARTWLTVLKVRLSTQLGRQPFPGEVWLAWNLGWSGFKRYGFQWADVPPAKFAKARQVNTLAWGLLKEDQSAR
Ga0209297_100033634	F026860	GGAG	MIKTAAIIERIMRELNNDQSIAPPPAGFFTVEQIRTELDMAHTRNASSRAYDLFRRGILERKAHKFKVATGQCHKAYVYKPIAPYQSIREASDGLFHYQADKVPNGWVRIVDYVFTHEISEAAVRSKVARASLKPKYWKTPRGIIGLHLNAFYKKSDLDRVMRKR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209297_1000336

Overview

Ecosystem & Geography

Associated Families

Sequences