Scaffold Ga0209297

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1000383 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027733 Open in IMG/M

Scaffold ID

Ga0209297_1000383 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28734
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (83.87%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

28734

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (83.87%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F005087	Metagenome / Metatranscriptome	412	Y
F012214	Metagenome	282	Y
F040590	Metagenome	161	Y
F099270	Metagenome / Metatranscriptome	103	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10003831	F001915	AGGAG	MEWRLAHPLDDVDDIVEMADTIFGVEADGILTRDRNVFRKHVTVTATMQLFDKGREFLAVCRDVDKLVAYCWFDRGGYTTYANEEISNAKFHHLDLSLPVRTRVRLLNEMIDQHILWASSWGIPVICSTSIRAEHNGFMKIHKKRGFTVNGSYAWGRTAELLKEMK
Ga0209297_100038310	F004695	AGGA	MLDKQNIIVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEMDGEQANQATEMVKYMVNSKNDSYAIIRDWAQDSLLHKNGIVMVSPVREPITQYKEVEGTKDQLRVFETMAAEKGLTVKRQNMRRIDVDLQGVMQEMMAPDEEEQVNTPQEDMNEAIRANTVYRAKYKMTGFSTSVKIKHVAQHYFVCNPTIPNIQDQDFVGFYDPMTLHECKSQFPYVDLEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVVASAGADRYSRVIMLTTAWIRKDVDGDGEEEIVECCFSGSYVLYVKEVDFIPLAAMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQSSTPRIGVNPEFIDAEEIQRGVSAMFVLDRKFDPNKHIYEFSPMQGNLAYVQSSMERFEADKMAMIGMTSPGDVLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLRDVLYIVWKTLIQYADDYNIQQLAGVCGKGKPFMDAISMDNYEFIDRKLINIDLALGFMSDENRLTRQQLIGQAQAQFTQMMMQLDPSAPELFAKVRRPFEDTLRVLGVKDVDAYLPTMEEAAKLAQAKSQQGPSAEQKEIQSKTDLNNAKVQESNTISALNIKKAEDIDTDNMFEALAAKRDKLTAVQID
Ga0209297_100038311	F003521	AGGA	MKSLVLNIREYFNRRTKGSDSHKEADVSRKTLVIENGECASRLIKNEDFALLFNLYRFDLLGRLEECRTDPERIENAFNIAGVRDFIGFIEKTEFLGKVAKKSIN
Ga0209297_100038315	F000857	GGA	MNDDEVRINEEYYSGGILEAGIDGVFRHNDKLFNEVKSGTWSQTFKTPNIDYKVGAVDGVRYVQYDQKNVEEVKQFCKERREFHKVHGTDNPFFAGTAHMMQLPKCFAHEISSKWFNNRPWELIKQEKKDKILFYAIVNEYYSDFVCHPTGKIPLPYNPTIPTK
Ga0209297_100038316	F005087	AGGA	MALFIQSANALVSRIASWVGAIPSSIGINASSYNSSTGVITCASNPSSLVLIGDFIGPNMMGPFAAVLAVSSTTITVNDPDAVWTGITYPTAILKLPSASALEIQACIQMAELKMRTIELPALRSDPYATVSPSTLTTNAQGMAPIPSDMCFPILFFQESPPSNQPPGATALGPWIVYDRVGDREIIRRRMIDQLYIRPFGVPRVIRASFSEVGPNYVFTPNPGDSVVIKAYYQKTFPFLFSTTGDNLNPIVQSNGVLASFPEGYLYGTLSAYYDKNKNVEESQKWDARFDASYGLIEDQNYKGKWRGGDQHLTSEFQPRNYRYSFK
Ga0209297_100038323	F012214	GGTGG	MSDYQRLRTPFPQMSFTPDVPSNALGPNEYNSGRNVEADVRGIKKIYGEQDILSTIPNLPIFMDGGFRGEAQWVYIIATRDSSNRGRWYLITTAGISNITPGVGANPAAYLTGYTEDINITTSWVGNVFFINDGLTSPMYLLSTATEIYKYDAAPDNYVWNYDLDVSATRAAFVRNFCSPNVGNILIAGNLTKDYITSGLTINYPTTVRWSQAFANTGVPATWVPTLSNVANEQEIPVRGPIVDGFFLGGNFYVCSYWDTVVFSPIAYQNSTAPIFGVRLFNQGRGLINNNCWSNTDTNVYGVDSRDIWVFNGSDFAPLGNQKVRDYFFRNLSTTYSDRIFMINNTQKNQIEIYYPDLTSSGWCNQMLSYRYDLQIWNAPKDIANACMGAEAPIFTGGVFKFASRTVTYAPAGASSKLIQTNIGNSFINSAAIPALFERNNMVLQGSQGPVPYSSKVYIHRVLPEIAGTGVINITLGGANSTAQPATYGQTGYVNIVTDNPWVTTQQNNVRTVSVKVESNDATDAWNLTALNWQATVVEDAF
Ga0209297_10003833	F099270	AGG	MSTNFLYAQAPNRKGNVSKQTVSKSGGCTNVTAAKHGTATPKGNQGAPKASGNVYPVGNKVSVSTHADYCGTIKNDGYMNSDRNNYLK
Ga0209297_10003834	F040590	GAGG	MSAYGKVISGGKAMTSGLTKGINDKLKNYAESHKYSAMLATAVGKTFNQNPLSDNHLDNINGSKFTTPKLPKKV
Ga0209297_10003837	F001059	AGGA	MATYDIDALKEDLPTAKDLAQFVYDRTQIALDLIGKPKEDQYQVAKNALEGRKIPSEYVTDVNPYIDKKELIPEDDLPPLPERPADLPDIESRIHYFGATNMPHPSNPQSDEKVAIDFRKYDNGTVTFQIVGPVFQVAVGERLNKFGQRVPEKYTWNDPRTGETLMKRPDGTYTERGRKLFQYCSGEKGGGIWGLIDRDLTSISSKNIVDPWA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209297_1000383

Overview

Ecosystem & Geography

Associated Families

Sequences