Scaffold Ga0209297

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1000769 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027733 Open in IMG/M

Scaffold ID

Ga0209297_1000769 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19708
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	37 (88.10%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

19708

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

37 (88.10%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F015570	Metagenome	253	Y
F019101	Metagenome	231	N
F029673	Metagenome	187	N
F063332	Metagenome	129	Y
F079808	Metagenome	115	N
F079815	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100076916	F004231	AGGAG	MSVKPSDFKHEICVYLEGIGECLVCFDILTPGDELDADHSDTYEIDFSVFDEDDKHITYDISKKQYNHCNNKAMEEMLDITTAWRKEWQSAYGLRTYRTESVFK
Ga0209297_100076917	F029673	N/A	MTKQEMITHLRMAACNENTVTGMANAFDLGAEHERDVIASIIFNMVKDQHLAQNIVDTMRVRE
Ga0209297_100076918	F015570	GAGG	MNDKLDEAFDLLEFDVTDQIRNMEYLAEQKKISTGVTDGGIQRALVRDLTENLRTLQTSNDPLLLRNDVLEEVAVELAKLPFGDTAASYAAFVRAMKS
Ga0209297_100076921	F079808	GGAG	MKIKDELQAIYEDEENVYYCCYCLEPQGEKIGCCHENHFVEFKYLDNDCKQEIAQEILNG
Ga0209297_100076923	F079815	N/A	MRIEQSVKTLDKKCLNNKYDGFIQDISGIQSDLIMLSHWIGEQQVKHSEYLNRSK
Ga0209297_100076936	F019101	AGG	MLHEGRMELEGAKKTIEGVMADVKAIKGIWDWIVGLFSPKPKSKPEDIPKPLAKAKAASKKQQTYEEIELQTINEVGVQLGNFFDIQAQLNDYYASLEAESKEHYDPNQNTSKKAIERALVELQMENLDAQIREQMTVYAPPELKAIYTRFLKMYAKIQQEQEWARDEEIRKTRRARWAKEQREIDFIYFVSGLVGVAFISLVMGWIMWQVKTMTQSSLLLG
Ga0209297_10007696	F063332	GGTGG	MTNPNELKKIKAFVRGIIEGIKDTHEPEDIDFYLEDYWNAWDETLDVNIWLDESDPQRYIATLYRVVDGVRDDETFQRLDYL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209297_1000769

Overview

Ecosystem & Geography

Associated Families

Sequences