NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1000979

Scaffold Ga0209297_1000979


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1000979 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16974
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (8.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007798Metagenome / Metatranscriptome344Y
F007859Metagenome / Metatranscriptome343Y
F008688Metagenome / Metatranscriptome329N
F013524Metagenome / Metatranscriptome270Y
F019824Metagenome / Metatranscriptome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100097913F007859N/AMKNLLIILLLCTGCTSGMYLRYSYNRALENLPLCSRVHAINNDYITYSMIEASTNSVYVIHTNYYRAYYNMGGKIIKTTPNK
Ga0209297_100097914F008688N/AMLGSLAAILLTAMTIEPPKIKVYLIMSYRGNDLAIEKVYLKKGNAQKYCDMYKDSHNYSVEERELTE
Ga0209297_100097915F013524N/AMKTNKDVVNRLREFTQNNCNTTLDPKLCEDIRYLCDEVERFSREMVRVNDHMDADHITIQRYKNKLEKCQLKLSNYEPF
Ga0209297_100097929F007798N/AMKDTTLKQLVRDRNGQPRGYVVATVINDSIRIGWSYTNTKLGDRFDKQKGFVIALGRAENGWGKNIRVPHNVDKSLRCIAKRSARYYKNIQLAWVA
Ga0209297_100097930F019824N/AMSDYIKDNFTGSIDDLLSHCASLDVAKVEEQVKVEEKAECIKVIMTEMECNEFEASIIYDEIALQEVKATVDKMVSDGLLYVSGHNEDGEPLFNLTELGKLIRNEL
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