NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1001190

Scaffold Ga0209297_1001190


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1001190 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15115
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (95.83%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F001477Metagenome / Metatranscriptome687Y
F003212Metagenome / Metatranscriptome500Y
F014590Metagenome261Y
F044984Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100119014F003212GGAGMKDKYLVTLEIETYDGDPKTWDWDVIFVGEDDIKIISSDFKGRVLPTEGESNE
Ga0209297_100119015F000821GGAGMNEEYLKAKFDLCISQAEKDLQQEEIARAIKNLERANSALSRLFGLEEEAEND
Ga0209297_100119017F001477GGAGGMSNIYTIHPPKSDLILFYEVVEAGGENTWGGADAGQAIQWLTHAPVGSRILVSAWDSDEEDAHLVGQTLDITEIVKAASL
Ga0209297_100119018F044984GGAGGMTDEVEKRVATAKRKNVRDRNYRRARDRALVRLAHLYPDTYKQLLEMEKIEDEKQGKNWISIDGTTVLSVGVHTRANSVPDVAGRTDYESADESYDGGEA
Ga0209297_100119019F014590GGAGGVRTRHLQSVTHEHSVTIKTKSDVSSPYGPVRAGLTTSQITNEARLLELLNSLESVVDNLNFKSFTAYDTLVTAMEGVRVALSNIATEEGGTDADRC
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