Scaffold Ga0209297_1001285

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209297_1001285

Scaffold Ga0209297_1001285

Overview

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1001285 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	14618
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (16.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008423	Metagenome	333	Y
F035305	Metagenome	172	N
F090396	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100128516	F008423	N/A	MTLIYQGKQLKLHKRATCLLELLKEAQRRQELFQKDLSLWRKGINEEPVRLMSKEEDILIKIARMNNVQKRILKSYHWLILDLYEITDQFMLPINTFL
Ga0209297_100128520	F035305	N/A	MNLAIWEIAPSKSEIETLAQNVANELSEGTIKAEDVAVKISVMENFTKTLRAKSEEHIIDFLDKCPKGKYDHLGASLSLKDTQTYDYAAYSPRWAELQAQIDVLKAEQKDIEEEGKKFERGQIPLKSYKQSFVITLNK
Ga0209297_100128524	F090396	N/A	MIGNNGGVHNELCRFKDKGEALPLKVIELVPVSERLPALVKMYGNDKIAAVLSKSVTRALNNFNLRVAMTPEQITDLCYAILDEAEQDQLAIQDVLLFLDGMVKYKYGKVYDRMDMPTFFEMLEKYREERHLAFMNGKDEAHAQFKA

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