NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1001592

Scaffold Ga0209297_1001592


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1001592 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13143
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008619Metagenome330Y
F023109Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100159213F008619GAGGMSFQTIFEIQQSMTVDNRRMVGQQVARSGYITVAQYMTAVPWVFTITPHDYLYYPQVRDVIQAIDNKDRQLAESISFASSNLSWFVAMRGTATTAILNGTPAANTQTLALTSNGTFKAGDFVMVGGYVYKVTADSAGSSINIHRPLIGAPTSGAALALGTACTFSVVAEVCPTYTLNPMANGAYVQWDQPFVFREYIT
Ga0209297_100159215F023109GGCGGMIRLATRNDIPRLLEIVEAYAYENPIKKLSEQNNHFPRYVEELLFSIISGRGFIYIDSHLRGAIVAYRTGNIWSPKVKELNELLWWVEPEHRNGTVGGRLWKAFDDTANEMLKNGTVDIVITSVSANGPLIDYRKRGYAAIGASFVKE
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