Scaffold Ga0209297_1002706

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209297_1002706

Scaffold Ga0209297_1002706

Overview

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1002706 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9653
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (95.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016392	Metagenome	247	Y
F052471	Metagenome	142	Y
F086848	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100270610	F052471	GAG	MIVKIRTFYGRTRGLRGDRQTKVDQGVAWLCQKCGEVILYEHLIHKHFCKTQIKLQVHSD
Ga0209297_100270611	F016392	GAGG	MTSAFDYKGQPSIWLTDTKLKRFKQGEEFAKKRQDKQDINHKNEVFIYSKALSKKK
Ga0209297_100270616	F086848	AGGAG	MSFEKEIEELIAKIAPTKDIAGGFMTRDQIIQLIRKVATEAALVGYAHAEKFTRGRMEKKLTMLEQELTIIRDQLKDAELDLIASSK

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