Scaffold Ga0209297

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1002800 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027733 Open in IMG/M

Scaffold ID

Ga0209297_1002800 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9476
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (8.00%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

9476

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (8.00%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (12.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018529	Metagenome / Metatranscriptome	234	Y
F023790	Metagenome	208	N
F043930	Metagenome	155	N
F056374	Metagenome / Metatranscriptome	137	N
F058129	Metagenome	135	N
F059905	Metagenome	133	N
F071154	Metagenome / Metatranscriptome	122	N
F088880	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100280011	F056374	N/A	VLPLSHGLLDWLQMKARKTIEIEVIKERVNRFLAHSRDEDSQVRKGHHGLATMLMMEAGAYKGFHYLRKEDVAPGMTFGVEWVDGKPVFHDETRTYFI
Ga0209297_100280014	F071154	N/A	MEIKFKDGNLQIDLHSLLDNIREEDLSEFFESISCNDKVIKHVTDQILDRWTENVYSGSSNTSASAEVYFGLDKAWREVAKRSGEVAKREIERLEEALKRRNEEYYNLVNEYSRKNRDGRYQD
Ga0209297_100280021	F088880	N/A	MRIHTKDTAFIAMFVLVIICAIAWGLYIRSTNNTIKVIDGCQYLKNYNGHGWNLTHKGNCTNIIHYKK
Ga0209297_100280023	F058129	N/A	MKVYLVYNNSDRDGGVNAIFDTERKALDFVIKEYYSAPYFNNIDSILLDNLAREYVDIDIVL
Ga0209297_100280025	F043930	N/A	SAPVRLAKMNKLEKARWRNILRKAAKANRLFKKGYLVFDHHGIPFEGFKFENGLLYEGSENYRSIWISKDKPWSQHLQTPIKEFNAKRFDKWTAVHPKHIEKI
Ga0209297_10028004	F023790	N/A	MKMLLQSKRFETTTILEDNKTIYVVTTRGELFPDNTQSKAITFDFQRLDKKKLTKKEEKSGDDVFNSIIKDKR
Ga0209297_10028005	F018529	GAG	MNLQEFKQIFSEYGGGFVSPEQINELAEFAPDLPLGVKVGYGSRFATTAKHFKLDLENNTKYHLDVHNVEQYVRDVFVPCSTYDEVRRIFGWNNKE
Ga0209297_10028007	F059905	N/A	MKNDCKNAIRYLVSKTYEVYAKYKNSISVLSLPGESWEFENHILNHQDYRNCIQQIPMDLQLICFEKSFRSYSVSNLLDKNKDNNTQYINDKVTLDHLKLLKNKNKFLWFDFCGNPSVESLQFLNSCFVQGEKICAIFTFTLLWRKRDNLPIEIDNLSQNNTNEEAVEHYFKQALKDLNAKSEGYSNKITLLWKYTYISSRAPMICLCITNDSTLKNEPALKGQGELLKPDQEITPAAQTKGDLDLGEELVCKMKTSKRSLAAHKAWVTIRANKAKATLAMAQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209297_1002800

Overview

Ecosystem & Geography

Associated Families

Sequences