NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1003121

Scaffold Ga0209297_1003121


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1003121 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8916
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (79.17%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000166Metagenome / Metatranscriptome1810Y
F002099Metagenome / Metatranscriptome593Y
F014143Metagenome / Metatranscriptome265Y
F067527Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100312110F000166AGGMPNIPTPEDAIHFAQSVKKWQQVLSLGDWRIEKGMKPAKAAMASVEFTPAARLAVYRLGDFGAEKITPDSLDRTALHELLHIFLHDLMCVATDPKSSDEEKEMQEHRVINLLENLLSKDSNG
Ga0209297_100312118F014143GGAGMNTHYLIHVRKIFSTYDAPPEVIRSYQKQWVKSVRQLGDKWLVAKPIERIQ
Ga0209297_10031215F002099N/AVRWLLALVLTLALHSTGKDLCSVREFWSIAYTIHNPSERHQQLSMWLTNNARFCRSQDFVVIWNNLPVWAGTADSAEIRSKVIHGYKEAIEREKK
Ga0209297_10031216F067527GAGMIIPSKWYPMVQPRYDFQTVVFDKAAEKVDDDYRLAMKAHKIELVIAELEVELYNKKAWVNQLELAMFKTRRLDLYA
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