NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1005853

Scaffold Ga0209297_1005853


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1005853 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6272
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043285Metagenome156Y
F087185Metagenome110Y
F090291Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100585312F087185N/AMTHREYTLIVENPIYEMVDSATIAFYKNRGETLTLSQADFETIKGGNDIVRYVSAGHGMSASVTFNKENFANEVQYTEVTISTGVAKLGKRKSK
Ga0209297_10058533F090291N/AMTDTQTPQDTFQGRPVANRIRIEKEGDFATYHEAEAIVKAEGNITGSMCSPAPTGFASADKYNYISKWYNMDAGDKKLLAGVITPTEGGNFRNGPLEIIYFGDL
Ga0209297_10058537F043285N/AMTRDEILQERKWLMTNYNKKGSFGYETRLLEHNRQVELFNKDLGRRARESAKCLKIGDVVYLEERHNRKGLWRVDKIMVKNVLLVPVGESDFKGRLKASAEMLIKVQAEDETLVNVLDDIGLI
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