NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1007115

Scaffold Ga0209297_1007115


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1007115 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5628
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006696Metagenome366Y
F049495Metagenome146Y
F071151Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100711510F049495N/AMSDLPNFAAWNHETLAKFALEAYLRLQVQQDALEQLRGDLKDAMQLVRASTLSVND
Ga0209297_10071156F006696AGGAMKFIKFLKDYYRDLTPVEVIERELKQAHLDRLEAESASEYAKACHDLSMARIERLNTRLGEYK
Ga0209297_10071157F071151AGGAGMTCCDYGKCTNGPDCPVRKQRTKEINDAYANGFKDAQLNDPIDDLADTFKALLTMMAVVLCGWIAFLLFWGK
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