NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1007567

Scaffold Ga0209297_1007567


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1007567 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5436
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (55.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → unclassified Autographiviridae → Pelagibacter phage HTVC025P(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013082Metagenome274Y
F013525Metagenome / Metatranscriptome270Y
F019968Metagenome / Metatranscriptome226Y
F086632Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100756714F013525AGGMHDLSLKNPDQIKQDLDSISEQMSEALYTFRRCEEFKKITFSQITLTKKLEKNCSVSEAEKWAYSDKDYATIIEGLLVAEKNYSILKGKYANLQSWVDLYRSWLVTQRDLSR
Ga0209297_10075672F019968AGAAGGMARKDVGVICSMSYYEMKLMTCALSRILLENEVRGINTKKSITTLISKLNNMLTRQC
Ga0209297_10075674F086632GGAMKVLIDSDILKGCYEILKKYFITQEFTSVHKITRFEKNIYNEIAKILDKKND
Ga0209297_10075678F013082GGAMKTVQQEINRLVLESQKNPSIVANEAPYYYDLCSVEDKTITLDEFYKLFPYYNPDMNCEYWQTQHNKWKELWTDKA
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