NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1010223

Scaffold Ga0209297_1010223


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1010223 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4606
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003904Metagenome / Metatranscriptome462Y
F010913Metagenome / Metatranscriptome297N
F014128Metagenome / Metatranscriptome265Y
F061841Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0209297_10102232F014128N/AMEQLQKFGIQIGFLFSGLFGSILMATKAEKTDTKSVILSLIGGMSAANFLTPVLVDTLNITNVKHQNGIAFIAGFLGLKLVEIVSEKFLEKVSGNKKKTIRKTNKRKK
Ga0209297_10102233F003904N/AMNAVIIKIKSYLWFVLLPVAVITLLSISSLKDIEQGYTRFRFGRDITLYLRKSTDLLTYLGTAYTTTSDKKFLNQFNEHLKEREKYFNGEIFISKILTQEELREFRKGLDISSDLAKDVENPAFEKMDNKAFFSDKYLDYKRRIIENNQNFRTLINDSSEKIIKDEIVKLNIYLYTLCFIILGMVYLIKQENKPVTKIRKRIKRKK
Ga0209297_10102234F010913N/AMNILTKFFKAVFRNNDNNECYNLVLLKAVLDSNKQQTERLKEIMSAINNLHDALARLSSATDSAVTVLNTPHPSEEAIQAAADLVNSQAARLEAASDNDPTTEAK
Ga0209297_10102236F061841N/AMSNKLNETFKKHLKLLHEHLNEIGDPENDTISARLAHWMEQNSSGYTSEFEVDRILSDLDIKKGTSEFNELVDTFKKEWRFELKGDEFVKIIKKGSGVSDKVVKDTANQYIKHFGKGSYSLGISAKDFVSLSQGRGDSDIRSNFPNWSDKNFEQILNILYTDGGLKRPVDETFQKHLGLLRKKLNEGNDNLVSMIERYVEIIETLKSISLSRDGGDPDLEDEKKQIKNQIISSKGQEYFNMVDEFVELKVRKGNQSEVESLANQLGLPQLALSEVTTEGSEPSGLRGAEVIDVMTSSDGKVHLRIKAANSTQLYDAVLV

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