Scaffold Ga0209297_1015092

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209297_1015092

Scaffold Ga0209297_1015092

Overview

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1015092 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3718
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (30.77%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034921	Metagenome / Metatranscriptome	173	Y
F043930	Metagenome	155	N
F088880	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10150922	F088880	N/A	MRIHTENTAFVGMFVLVIIGAIAWGLYIRSNNNTIKVIDGCQYIRQYNGHGWNLTHKGNCTNTIHYKK
Ga0209297_10150927	F043930	GAG	MNKLEKARWRNILRKAAKANRLFKKGYLVFDHHGIRFEGFKFENGLLYEGSENCRSVWISKDKPWSEHLHTPIKEFNAKRFDKWTAVHPKHIEKI
Ga0209297_10150928	F034921	AGTAG	MSYIGVAPQDQTNFQYKVIEAQKDFSDYSYPTTKEEYWAIVDKYWPEIKDILLKFTYLDPDDLDKWAKERNSEIASVFNNAWFNAPDNGRIHLIPAWHIFCDLCSESYLLHEPQN

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