NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1022217

Scaffold Ga0209297_1022217


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1022217 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3007
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016254Metagenome248Y
F090064Metagenome108N
F101027Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_10222171F016254AGGMKAKGSGDLVKVRLRAKPERGTKMVLSDATKKEAMEAAQYGMPIDRIAILCGFPAGNQTQWHRWISANPKFQLELDRARAQGELLLQRRVMSGEANWQSAGWMLERTRGYVARASLEHTGKGGKELSVSGNLLGAFGGQSK
Ga0209297_10222175F101027N/AMKTYFETEIDKQSLCASVGRAMFCPKCENLMDWKSSVEFSVWEIASGKCLTVRAICAPCWDKVQSFVTVPSTKHAVHFIDGRKL
Ga0209297_10222176F090064GGAGGVKVYWTAFYGRSEYTFQGRNAKRDALRLAKRFGGRVAREKGKL
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