NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1000254

Scaffold Ga0209087_1000254


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1000254 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34988
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (73.21%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011648Metagenome / Metatranscriptome288Y
F017467Metagenome240Y
F023062Metagenome211Y
F024733Metagenome204Y
F037693Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_100025414F024733N/AMAMQYKKFDQRLHDECDPPARNAVAGWLKNLWYVDALPNPDKYAVDLVLSKNGQEIGFAEVEVRDWGMQFCPYDTIHIAQRKEKLFAHPRTTMYVVTSDYTHAYWIRANKIKDCPLIEVPNRAVARDEYFYDVPKDLWKFVDLRELF
Ga0209087_100025419F023062N/AMSFEIDPVKYGVLWNKVESYEAKFDDMSKKIDKMEASVEELVAMANRSRGGFWVGMGFVSAISSIVGFIAHWFSNK
Ga0209087_100025433F037693AGGAGMALVKMTVTCNHCKVSHEEYDPAHYDDREKYLAYWNLPFEGEEADKAWQDKLNMTPKEAPIVISDIEGHISMADGQWVGSRSSHRENLKRNNCVEIGNDVSFEQKKHELSRSENESRKRQIAELAYAKLR
Ga0209087_100025455F017467N/AMKNNSDDYLAWWYIGVAKKRGWPEVVRLLAQYPKKEERIKQLIKRKLGK
Ga0209087_10002547F011648AGGAGMSEQDQDFHSFQQHLERIFKDLEDGVFITQAEISDLRHACGLPRNSHVNPLLRDVINEFSNIFRSAK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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