NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1000285

Scaffold Ga0209087_1000285


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1000285 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33618
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (80.39%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035727Metagenome171Y
F062575Metagenome130N
F066703Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_100028520F062575GGAVALYKDAKAAGTDLYKITKEISGFIGQFFDAHEEVKKDVKRQELDPPKTKSMKAQALENVFHQIELERQSVELREFLIYHTDPALGAVWSRFEEEYKKLNEENEKQIELDRQMEMQRKWQRKRTISNLQDKALIIGAVLTITIYLHLLLWSIKQMTTGK
Ga0209087_100028536F066703GAGGMAITKFTQQKDDSFDDTLRLMCSVQGCPNRWSVNSDGEKPKCSKHQWNKNEKKTPAKSWHDFGEEF
Ga0209087_100028537F035727GGAMRKRHLLKAGTISGKNSKMNHEHRKIANSILSRLKDGEQFSQSVIRTALKDTGDLAPNRGERLDQAVQEKDQGGGRNRSMGMVAENLIRLSKKTWSESCGRIAEAHE
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