NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1000386

Scaffold Ga0209087_1000386


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1000386 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28518
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (82.98%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014122Metagenome / Metatranscriptome265Y
F020323Metagenome224Y
F055667Metagenome138Y
F079811Metagenome / Metatranscriptome115Y
F096868Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209087_100038611F055667AGGAGMTKSETREISKAISYTAAGLGPDYLARALSALYRAARSAKSQNEILTIALSYGVVSNNEFIIR
Ga0209087_100038613F096868GGAMIKTMTAKYPGRCSQSGARINPGDVILYDTATKRASLQPDSDTIQFTTVSPRVSDVFNFSGREFYRNKKGRCEDAPCCGCCTI
Ga0209087_10003862F014122N/AMSYGVALRNSVAIGLSGIISLFGGRGSEQSQSNLLTESSDNLVQEDGGLILLE
Ga0209087_100038629F020323N/AMNKKLTQLKAKLRAAQAELAIRTRTNNSASRAYNKVTAHIAELEKRIADMEKISE
Ga0209087_100038631F079811GGAGMNAVPAKYFAFPPYRAEDLGGKMGWWGVMNRNGVNCLTFPDKPGAVVTSEEWAKQIATEWNDAYKE
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Institute for Fundamental Biomedical Research
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