 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027734 Open in IMG/M |
| Scaffold ID | Ga0209087_1000888 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 18314 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (84.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000857 | Metagenome / Metatranscriptome | 858 | Y |
| F001915 | Metagenome / Metatranscriptome | 617 | Y |
| F004695 | Metagenome | 427 | Y |
| F005087 | Metagenome / Metatranscriptome | 412 | Y |
| F027490 | Metagenome / Metatranscriptome | 194 | Y |
| F098944 | Metagenome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209087_100088811 | F004695 | AGGA | MLDKQNVIVENLASSSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSEADGDQARQATEMTKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPVRSPITQYKEVEGTRDQLRVFETLAGDKGLTAKRQNMRKIDVNLEGAMQEAMAPDESEVMQEPTGDEIQEAIRNNTIYRAKYKLTGYETSIRVKHVAQHYFVCNPTISTIQDQDFVGFYDPMTIHECKSQFPFVDLELLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWIRRDIDGDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPLQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPTKHIFEFQPMQGNLAYVESAMNRFESDKMAMIGMTSPSDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLIQYSDDFNIQQLAATCLKGQEFLDAKSIENFEFIDRKMINIDLALGFLSEENRLTRQQMILQAQQQFGQAMMQIPQEVPEMFIKVRRPFEDTLRVLGVKDVDAYLPTMDEAVKILQAQAAKGPSAEQQETQSKVALNNAKVEESGSVTALNMRKAQDIDTDDMFEALAAKRGKLSSVQVD |
| Ga0209087_100088815 | F000857 | GGAG | MELNLNNEEAKVNEDYYTGGVLAGGLEGALIKNDKMFNEVKSGTWSQTFNTPNMNYKVGAIDGERYVQYEQKNVESVRQYCKDRREFYKAIGTTDNPLFAGTFEAMNLPKCFAHEISGKWFNNRPWELIKTDKKDKILFYAIVNQFYSDFVCHPSGKIPLPYNPIVPTK |
| Ga0209087_100088816 | F005087 | AGGA | MALFIQSGNALVSRVAQWVGAIPSSISINATAFNSSTSVITASASVDGIILVGDFIGTSTLKPYTAVLAVSGTSITVSDIEGIWAGTTYPTAILKLPTQSTSEILSCIQLCELKMRTIELPALRSDPYGATPSTLLTDSNGFATIPADMNKPILFFQETPNSSVPPGTPAASMGPWIIYDRVGDREIIRRRMIDQLYVRPFGVPRVIRASFSEVGNKYIFTPNPGENVSIKAYYQRTFPFLFGPTDDALNPIVQNNAALASFPEGYMYGTLWAYYDKNKNNEEAQKWSARYEDAYGLIEDQNFKGKWLGGDQHLTSEFQPRNYRYSFK |
| Ga0209087_10008882 | F001915 | AGGA | MEWTLAHPLHDVDDIVDMADSVFGHEADGILTRDRDVFRKNVTVATTVQVFDKGREFIAVCRGDKVIDTFLGQAEVQDTLLAYCWFDRGGYTTYSNEEISNAKFHHVDLKLSPRLRVRLINEMIDQHILWAYRWGIPVVCSTSIRAEHDGFMKIHKKRGFAVNGSYAWIRTEKGIECLKK |
| Ga0209087_10008883 | F098944 | AGG | MFEEIRPEGSTVTSEEIKKKAREYAKARRAQNKAMKLATGQIEPKEAPVVDEFDMTAFVPRSQKAAGGRPKSIVNKVTEYGALFNKLNDERTSKGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDAEDALNEFLDSLRKV |
| Ga0209087_10008886 | F027490 | GAG | MSYGTVINGGAQMRKGVTKGINDKLSTRTAEDDRRATVAGAVNSAYKVNTISSQHTNNTKGGAFTKPSNRSKDYAA |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |