NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1001219

Scaffold Ga0209087_1001219


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1001219 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15326
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (20.59%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020651Metagenome / Metatranscriptome222Y
F032560Metagenome / Metatranscriptome179Y
F054853Metagenome139N

Sequences

Protein IDFamilyRBSSequence
Ga0209087_100121918F032560N/AMKQQTYQDLENGMQNLVPIERQMLLAEVYHYCWYSPEAYNELKTFLKKWEKECEIKAVFFKPESEDSTNQI
Ga0209087_100121923F054853AGGMTEDKPNTEPEVTEEAIEWEEAETTTRSDLISCAYYAYSAVEDIDLTLLSKIEANKIRRIKRQSLDIIAEVIGEMHAEIFDLGEE
Ga0209087_10012198F020651AGGMYIAVILLNLNRNHLAKRVVDQNFNNAGYNADCFLVDNGSDEVPYDLYNWTNCNVSTKKRGIAAGVNAGLNMTRAYDGVCILANDILLPENWLLKWVNYSNLIPKTGIIGIHCVEDLPPLVDGIHKVHTPFGDNYLTRELIDTIGGYNEEYDPYGMQDRDYAERATIAGFTNYYLPELHSEHIGHDVGNNTEYRQMKDESLARAQSVWEKYQPIYHEEKNLYAHFSNNK
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