NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1002391

Scaffold Ga0209087_1002391


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1002391 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10598
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (96.30%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011292Metagenome / Metatranscriptome292Y
F021243Metagenome219Y
F068756Metagenome124Y
F091642Metagenome / Metatranscriptome107Y
F096622Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_100239114F011292AGGAGMTPKSFDIDTCKEVVGDARMRVIEAKARQDADNGVMDAPAMAKGTYWDGVYSYMEYVVYVTAHHKRMERIQRMKERA
Ga0209087_100239116F021243GGAGMKDAEDEAFEQLALRQGQWDYSGQNTSGWRKRQVAHMDVHSHPAEFVHLHRNDTLEEVAVELETKFTLPFGRDTVQSFVAYIRGMKR
Ga0209087_100239117F068756AGGGGGMSDFKSGFGLAPIKKEGSIADPDEFTWLCACEACALKYQRWKERFDIQQKELRGEK
Ga0209087_100239123F091642AGGAGMGSDQKFWLGIWGMVLAFLITLMVCVTINAHGRQDKWDKAVSNGADPMVTACALNGISHSEIAICTILAQGRK
Ga0209087_100239124F096622AGGMSKWESHKGKGNTGFNMLAQAGSVAKTMREEHVWMHQNGQLCWACQKTSRPQQGCVLTIKPGFKKYVCKPCVDARKEKEAA
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