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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027734 Open in IMG/M |
| Scaffold ID | Ga0209087_1002835 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9655 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (78.57%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001059 | Metagenome / Metatranscriptome | 790 | Y |
| F001915 | Metagenome / Metatranscriptome | 617 | Y |
| F003521 | Metagenome / Metatranscriptome | 481 | Y |
| F004695 | Metagenome | 427 | Y |
| F006264 | Metagenome / Metatranscriptome | 377 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209087_10028351 | F001915 | GGAG | MEWTLAHPLHDVEDIVEMADSQFGFEADGIITRNRNVFRHRVTMAATEQVFNKSREFLAVCRAPGFVGKDGYYESVPDKLLAYCWFDRGGYTTYSNEEISNAKFHHLNLALPAKTRVRLLNQMIDQHILWAHNWNIPVVCSTSIRQEHDGFMRIHAKRGFKVNGSYAWGRTIDLVKGVINGC |
| Ga0209087_100283510 | F004695 | AGGA | MLDKQNVVVENLESLGASRGLTEQVAHEVYLKMVDYLRLTQAKNTFNRLNDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSESDDVQSRQSTEMVKYMLNSKNDSYQIIRDWAQDSLLHKNGIVMISPVRNPITQYKEVEGTKDQLRVFETLAAEKGLTSKRQNMRRVDVDLQGVMTEAMATGEEPAPEEVQDAIRSNTIYRAKYKLTGYETSVRIKHVAQHYWVCNPTISTIQDQDFCGFYDPMTIHEAKAQFPFIDVEAFAEHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADSYSRVVMLTTAWIRKDVDNDGEEEIIEVCFSGSYILYVKEVDFIPIANMCPKPIVGNFFGYSLAERLVPMQEYATSIARAEMSFAMQSSTPRIGVNPEFVDAEEIQRGVSAMFVLDRKFDPAKHVYEFSAMQGNLAYVQSAMERFEADKMAMIGMTSPGDVLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDAIYIIWKTLIQYADDYNIQQLANTVTKGMPFLDAKSVENFEFIDRKLINIDLALGFLSDENRLTRQKMITQAQVEFGQAMMQVPQSAPELFMKVRRPYEDTLRVLGVKDVDAYLPTMEEAMKIAKEKASQGPSPEQQEIKSKTDLNNAKVQESQSVSALNAKKAQDIETDNMFEALAAKRGKLSAVQVD |
| Ga0209087_100283511 | F003521 | GAG | MKSLVLNIREYFNRRTKAHDAAKEADVNRKALVIENGEAASRLMLNGDFALLFNLYRFYMLERLEDSTTDLERIENAHYVAGVRDFIGFIEKTEYLSKMALKRVET |
| Ga0209087_10028357 | F001059 | AGG | MATYDIEALKADLPTAKELAQFVYDKTGVALDLIGKNKEEQYIVARNVLEGKKIPEGFTTDENPYVDRKDLIPEDPLPELPPRNKDLPEPDSQVHYFGATNMTHPLDPQSDRKVYIDFRKYENGVITYQITGPVEKVAQGTRVNKYGQTVPEKYTWLDPRSVEKVMRRPDGTFTPEGRGLYTYCIGEKGGGIWSLIDREQVSISQKNIANPWA |
| Ga0209087_10028358 | F006264 | N/A | MADPQSVFREKLPSQAEACARKTLEWLQKDLQSLHTLEPVEVYYLARAASILLIIRDTYGEE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |