NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1002877

Scaffold Ga0209087_1002877


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1002877 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9570
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (75.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007305Metagenome / Metatranscriptome353Y
F042870Metagenome / Metatranscriptome157Y
F043902Metagenome / Metatranscriptome155Y
F093303Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_10028771F043902N/ANMTIQQLRNSGYKVRVLHNRLYNGYYKWQVGSKPAEGYGYGPIDPDTKGGSTQIIIDSPHGSHYEGLAICSKKENYNKKLGVRIALGRCNVNETFYTQYSQTKATNE
Ga0209087_100287729F007305GGAMKIIQKTIKKAYENWEPNSLVRCYHYCAAFDGTKMIGFAQNNPVKMSTKAFRIGKRFNIPKYLEYPYVHSESHLISKLLDSYNTIDPNWAICVLRINRQGLILGSKPCVNCSKLLNAVGLNEIYHSDDNGNFICPTKTIK
Ga0209087_10028776F093303AGGAMSQDERFVLFWLYNTVAKKMPDNPYGSNDIIVNGINVTETVRKLLQDRLFV
Ga0209087_10028778F042870N/AMGELPDSKIPWWDNHYEDVYSEEVEDGYPYDMGTKVQE
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Institute for Fundamental Biomedical Research
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