NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1004418

Scaffold Ga0209087_1004418


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1004418 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7636
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074794Metagenome119N
F088775Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0209087_100441812F088775GGAMKKCNKCGEEKPLAEFNRRLTRAQMQARGMKGDVLMTISSKNCKACQPKRTPPSKKTRKELHNMVVSGDIGKSKMESIIEERQRMARLIMSKARYEAWVDKWRNQLKQTLDPMGYEIKKVRAQRSYAEQMGQGEYEGLLKKYLSILMREKSRILLDFEAEPSKYKKEKRNWWELVSSFAIESLRDRWLSIGREDREHMKVPELLSRRRDD
Ga0209087_100441816F074794AGGMLEHLVQFEPDVTSLEDFRELDDVSSGDLLSAQVATTEWLKELGVAADAEVNKEAQTTAAREAFNVVTTNTDDATQKSKLLQLKTPEAVRHITGMLTAYDWEFVEMAKELRGYTVAKLFEETQSPNANIRLKALGLLGKVTEVGLFTDKLEVKKTDLTDEEIDRKLKDKLAKFMGVQDADVVEDIEINETERPDTESN
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Institute for Fundamental Biomedical Research
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