NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1005543

Scaffold Ga0209087_1005543


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1005543 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6762
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (94.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014365Metagenome263Y
F061646Metagenome131Y
F061649Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_100554311F061646AGGAGMQSRYIFDKVNQDITAAITRQVDRDSPTRAYTPTNDDLVCAIIFVVSVALLIFFIR
Ga0209087_100554313F014365GGAGMKTFQIFKNVSYEYFVEAETLEDAQTKIIEENPEHESEELIEWVYADEHDGVNWTYEPVTQS
Ga0209087_10055439F061649GGAGMRDQTDCHYPHTRLCLQDCEDGCRARKTVWRKRTIKELQDQELEDEEFRKIPQYDYECKHLGVCNDRPTHCLDCPSNNA
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