NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1019058

Scaffold Ga0209087_1019058


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1019058 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3391
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005502Metagenome / Metatranscriptome398N
F016963Metagenome243N
F033352Metagenome / Metatranscriptome177N
F072095Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0209087_10190582F005502GAGGMRTLLSILALLGFTTTKLSNALIDLRPIAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGGKREWVAVDTGTAVKSKKASGGKLPVIDVFAASEKQFNAMRLPKVAMVEVIK
Ga0209087_10190583F016963GGAGGVIEILPQQSTQEQLLNRVRSLARELAEAKAALAAAEGRENDLIERMRPGL
Ga0209087_10190586F033352N/AMTDLTKFRLIENIEVMACRNSAERVVKAVNRGDLVQAKDLARKHEIAWHLADREFQDLNQPHRNNDFCDDE
Ga0209087_10190589F072095AGGMIRDLEQEGVLPISAAQSYGSAQLSQTTALIDLQTKHRDLRNRLDRIEEILECLLKKSGVQS
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