NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1034388

Scaffold Ga0209087_1034388


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1034388 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2403
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016143Metagenome249Y
F017287Metagenome241Y
F027764Metagenome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_10343883F017287AGGALKYYLESVRRVFESEAPCDKCSQAPDCKEYDKACRAFSYYVLHGRFEEYTVRHPTRGMFNKIFKEDDKALKNYLKSIKTREEMEIHDLFEE
Ga0209087_10343886F027764AGGMDIKIEIVKENEDGSADALVHFDKEGLGMLVQAGIIDILRKYIDQEKKAAKKGKK
Ga0209087_10343888F016143GGAGMNNEYIYTPVGTDITVRWRLAGWIPPSELPEYLAKWKYYQELPLRKLDDNAKKEYELVMKKAKVMRIR
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