NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1064287

Scaffold Ga0209087_1064287


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1064287 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1635
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010984Metagenome296Y
F047641Metagenome149Y
F075681Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0209087_10642872F047641GGAMEKLQISAQLLNQIMGFLGTRPYQEVYQLIEAIQNEAKNQPTPEPTE
Ga0209087_10642874F010984AGCAGGMLHVGRLEIEGAKKTAEQVIDDAKAIKGVFQWFIGLFTTKPSTDVPKPVAKKKIAAQQQSYNELETKLFNDIGLQLGTLFDVQQQINDHYHALEEESKTNFNPEQNTSKKAVERVLIELQLEDLMQDVREVMVYAPPQLKNLYSRFLVMHGKIEREQEWARSEMVRRARQARWRQEQEEIRVIETISGVIAVAFISLIFGWFMWQLRSWSTGY
Ga0209087_10642876F075681AGGAMSEEKIQSMEAKNQLIEKITFALLPLLFSCVVYLMS
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