NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1136669

Scaffold Ga0209087_1136669


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1136669 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)998
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027756Metagenome / Metatranscriptome193N
F032548Metagenome / Metatranscriptome179Y
F044916Metagenome / Metatranscriptome153Y
F064403Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0209087_11366691F027756N/ATRMKLEDLIDRKILYLNYPINKYAIQEGKVTEISPAEKCIKINNDWYLISNIRIIELFSEKERPALGFN
Ga0209087_11366692F032548N/AMKHNKEMEKAIRLLEELVNQADEDCPQDCRTMHFVNALEEASEFIMEYKNAK
Ga0209087_11366694F064403N/AMINVRSKILSDLKRSYLKEHPITLVDRILGYLNNLTDFQLCQLYSEKYETNPKYIAEQFEFKF
Ga0209087_11366695F044916N/AMGRKKVEKSRIEKGIEKEEKTFSVMAKKIIDAIKDEKELRAFAKISLEILYKDNPNLFADHAKLKLIKIK
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