Scaffold Ga0209190

Basic Information
Taxon OID	3300027736 Open in IMG/M
Scaffold ID	Ga0209190_1000019 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027736 Open in IMG/M

Scaffold ID

Ga0209190_1000019 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	126860
Total Scaffold Genes	106 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (16.04%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

126860

Total Scaffold Genes

106 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (16.04%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022816	Metagenome / Metatranscriptome	212	Y
F051730	Metagenome	143	Y
F076924	Metagenome / Metatranscriptome	117	Y
F102624	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100001910	F076924	N/A	MSSTAIETVSHATATPAPKYTTHLNRSWHEYQSVTPSHLHSIEHYNQSCVEHAELYGGHVMFLRDEVTKITGYYWYGNGFPAQNCADTNGYVDVRTGKKYTLHGEGSFFKDIGRQ
Ga0209190_1000019100	F051730	N/A	MLKRVRLTLMGDVHNNLKNASYTSGSGVGSSSIAVRRAKLRQSSKPSASLCPLQPVPGNSRVNNVHMPM
Ga0209190_100001926	F102624	N/A	MKYITNTYEYKNEWFNLLLCLLFTPFYSCIFIRKFSWSQIKMYMSPERRHVLKYPIFTGVLYTVETFLVFFALNTMTLSYYTIIRSGFIIFNIPWFKYLLKKPVSRLYYASCGSLFVSHILVSTQYFFQYQANDADNRGGSVVQNTLIIMVSCFLNSSYNNIIEYSMTRHGDIMPNIDFQIIFQMTYFVLAAPLSIYYTTKNTPPINPITMTMYFFIAFGLQLYMFNKIYILNSKQTLIPANILLSGLDLLRRVIQLTYSFVWFKEPFDATIGVSLLFLGLSGGLLLYQYIRDYRFGVNIEAHQQMVDDPEGRDHKRELDNV
Ga0209190_100001955	F022816	N/A	MDSIQSLFAPLDKDYCLLFYWLTVVNFIFLAVAGLGFISALVMLFRGKVTIMSTFYSFLMILVYALMYFQSRLFYSMCVTGNMKAGSFSASDSLPAVATQASGASPGAYRF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209190_1000019

Overview

Ecosystem & Geography

Associated Families

Sequences