NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1000043

Scaffold Ga0209190_1000043


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1000043 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)87100
Total Scaffold Genes159 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)86 (54.09%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002869Metagenome / Metatranscriptome524Y
F011584Metagenome / Metatranscriptome289Y
F014736Metagenome260Y
F050374Metagenome145N
F072348Metagenome121Y
F092063Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_1000043106F092063GAGMSKMADLDLSIRDMLEEGYSPVTVSVRLGIPLHFVYDILEDDQYGEDLSPYSTVNS
Ga0209190_1000043143F072348GGAMKYYTFYRENNNFDDIISDNIVKKFAQTKIKWYQYFMIGMRKDGNDQNFSMLTLKYGEDMVNNLTKDFTPVAGVDYIPKKR
Ga0209190_100004369F011584N/AMIEYITTFLALFFTDVFYTYYLRAIQNDEALKSSVWAVVVFFIASIAVINYTSDHMLLIPACLGAFCGTFVGMKIRKK
Ga0209190_100004393F014736GGAGMNTPIVPDNVIKMWADPRFQILAEVDKLLTGSKTWAGMEYTYHPIHPDKYKPVAVKVRKALYDLQAEYGVLE
Ga0209190_100004396F002869GGAGMSNEITIEMLDRKIAWCEQNIFWGKGSNIHRMQDFYYEKTRSSVKEDWPESFTFQELAKILNEEQVRYRVYYSKDNLTLRLFIYRPRCTHAEEKKMLDLGFVFASEGDTENIPDQPIEEVEQ
Ga0209190_100004397F050374GAGGMIDYKFIGWNNKDGADKVWGAIYIEDRTNSRPKVLIFWGRRGHKLQTKMDREGWDLDKLVRSKIEKGYKTIYDYQLDNVYPEFLSDLEKTTMWALLKL
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