NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1000204

Scaffold Ga0209190_1000204


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1000204 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42701
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (81.48%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012101Metagenome283Y
F025282Metagenome202Y
F064409Metagenome128N
F071151Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100020411F025282AGGAMSYLAHVTHDTQANTLEATWAEPLGEEIKRVKCRNYSPDQKADFLADCGAEGQKYTDMAG
Ga0209190_100020419F012101AGGCGGVAQKNVVAPKLPAAIGNTYDPALINQLTNVLRLYFNQLDNPAPMVASTQRNGTDVIAGLSFFPTGNTTAPSLPTEADYTNLRVGDIYYDTSASNVLKVKT
Ga0209190_100020441F064409GGAGGMKLFKLKGISKKYALRAAHYRRTAKGQGVAGLDFSEAALRELFDRESRGVGSVDKGKNGYAYGKWCVDLSVAMWVEDLLKGDVCKAEFLQTRIQKLQNKKKLEAVIPAPFFPHAITLEEKNT
Ga0209190_100020450F071151GGAGGMNTCCDYGKCTNGPDCPVRKQRIKEINDAYANGFKDAQLNDPIDDLADTFKALLTMLTLVLGVWIVCLIIWGK
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