Scaffold Ga0209190

Basic Information
Taxon OID	3300027736 Open in IMG/M
Scaffold ID	Ga0209190_1000238 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027736 Open in IMG/M

Scaffold ID

Ga0209190_1000238 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	39802
Total Scaffold Genes	61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	51 (83.61%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

39802

Total Scaffold Genes

61 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

51 (83.61%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001094	Metagenome / Metatranscriptome	780	Y
F004721	Metagenome / Metatranscriptome	426	Y
F008808	Metagenome	327	Y
F009064	Metagenome / Metatranscriptome	323	Y
F050167	Metagenome / Metatranscriptome	145	N
F057118	Metagenome / Metatranscriptome	136	Y
F093272	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100023810	F001094	AGGA	MNTDKLKAIAITYVRAAVAAVTALYLAGTTDLKTLALAGVAAVAGPVLKALDPSATEFGVNSK
Ga0209190_100023821	F004721	AGGAG	MATGKEGSSLTAELNRLAGTTGKADQGAANTYASTSGLGVNAALNKKADATRQPTSYKSLNAVCNELASTTGKSAIAALRSINV
Ga0209190_10002384	F009064	N/A	MIIELNKDEVRVCTMLAVERWLTKFGSTDQPNYAQGKADGRLEPEINANIRANVCEWAVAKHYNLAWNNPWYPNALHKKRYPLPDVGENLEVRSIRTQDSIAFWGKDKEKVIVGTKCLDLEYFSKVEIFGVAYPEEFMKPEYYDKYINGWRIPIDGFTHE
Ga0209190_100023844	F093272	AGTAG	VKGEIVPYNPYGVSGSIITPPRDVRSAPAWLGSRSKRFSNLVVRDKSGNIIVAVEDSVAVKLARRTIKNAKPKPLPATLRPLTELELRNMKAQERLEVMAKLLARPADNYL
Ga0209190_100023848	F050167	AGG	MSTTTTQVEDYLASISLTLADLANELATVQFDVASVNGYEPKGTILKALPTQTRFKPKSVWVSLGNGKYKHLTGEKGLIAKHSRLEGYTSVVFRP
Ga0209190_100023852	F057118	AGAAGG	MNLTNYKITIKTTATLVYHISEYDIDRAIELAIDAPYREWEVSEFDAPTGADVIAEEV
Ga0209190_100023861	F008808	N/A	FDNVFQATDHLLEDDEEFDPSLILPNGSRLMIGSLLRCLYKYAERPEQVKVITQSAYMTLFTAETQPEAIKDIVEEMIIKSQMMEIDDEIKQLLEGGE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209190_1000238

Overview

Ecosystem & Geography

Associated Families

Sequences