Scaffold Ga0209190

Basic Information
Taxon OID	3300027736 Open in IMG/M
Scaffold ID	Ga0209190_1000927 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027736 Open in IMG/M

Scaffold ID

Ga0209190_1000927 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20941
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (72.97%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

20941

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (72.97%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015467	Metagenome	254	Y
F018362	Metagenome	235	N
F023588	Metagenome	209	N
F024783	Metagenome	204	Y
F032578	Metagenome	179	N
F035297	Metagenome	172	N
F036672	Metagenome / Metatranscriptome	169	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100092714	F036672	AGGA	MKLWGEFHALLWTIAASVTTILTLSGGIQRVVIWLTVGALVLHLIGALTKKEESK
Ga0209190_100092717	F024783	N/A	MMDWGIVLAALITAVGGAMTTLMMVMRKENTEDHARVVDALDTLSGNVDKIGTKLDSHIDWHLKGTTNGETIAGNKVAKPKRNIKAR
Ga0209190_100092720	F023588	GAG	MVLVTWADAHSGVATWTPIDSLDKDEMIVATCGFLLTTCDGGKPEHITIYQSRTMEDDIDHVLHIPCAMVRKIAICTPDQLG
Ga0209190_100092721	F015467	N/A	MRYGAQNSNLHPRSTRVGLGSFAPDWSQNSPSPFLLGVRSYIHSPAKIGQDMRRITATIVTTLTLIIGIGTAQAAQAPKPTHSPTTTRSEVIPKERQPNIVFRHGDISWLPQLAAEAGWPPRTWKRLGQIILRESGGCPNRRGGDIVNKDCEVIGFDGSNHRSDTSLLQINGINYDPKRNKYAPICTQMKICTQEPLLDALTNLKAGLLLFRATGSDWSPWIVPEGGW
Ga0209190_100092722	F035297	AGGAGG	MEPLTNRIKAGWIIAFTMIGWLFFLLPMTGEDIPEGHPTPISNQAWVTWIIINFVMLILVHLLISKEHRANKRAIKTLKRVAKARLNHPTHR
Ga0209190_100092726	F032578	N/A	MNDPIEGRAYDVNSEDILALNYIKTQIQSLDHERRDQYSTLLIDAQSAKRNINLSANKSHRRYEIARGILLLMQDGQFDRDLVKGICSHITKETYTKAGEALGHLNAAQAELFAQICYGITVDQVTIQYIPEQNTFRVQEESK
Ga0209190_10009275	F018362	AGTAG	MAGLSRAGTFTSSEALNQVRIEGIGDFLRDLSKTYPEFNKQARIASQGVAELLVVAAKFEAASVTRNRQAMEVMKGMRAQRDRIPTIKLQMDSGFVSQSKPNRKRKVKVTRGDVFFGAEFGGGKYGKSNKTSAGSRAWLKNDGTRKGGGTTTQFLPWRGNEGYFFWPSVRKNKDNIAKVYMDAIEKVLEGLRDKS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209190_1000927

Overview

Ecosystem & Geography

Associated Families

Sequences