NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1001438

Scaffold Ga0209190_1001438


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1001438 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16630
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (51.61%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002398Metagenome / Metatranscriptome563Y
F010618Metagenome301N
F016812Metagenome244Y
F060914Metagenome132N
F105155Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100143815F002398GGAMIALISIFLLTSLDPIKNFVSLKTYISENAKAHCYVYFINEDLPDFPRVNIIEKNKFDFFAYLDTIGIEHSKVGSYYFFNRKPK
Ga0209190_100143816F060914N/AVQQKEKQLKRLIKVRSDISASIFPIQLYQVDDYFTAEENGIELFRFKSQHLCSIKAKELIRRRKNEKNAKIIQDINILKEQGIL
Ga0209190_100143820F010618GAGGMTLKDLILKLQELDKKYEQYSKDTEVVIAVHSKNEYNPEVNLDYIDEVVHPALDTFSGYLCRIVLCGEIEGED
Ga0209190_100143822F105155N/AMMMQNFLKTSAAKQLAAEIKYLEWDQVTFNFYHKSFKGYNFYKRNISLNYWQYTVVDDITSCTFKVYEKEAKTNAKLGNE
Ga0209190_100143826F016812AGGAMSTLYPELIEEDDEATFSSNLFKLYKLDERCGKLEAPNFRVIYLKDKKTQIHISNHFNSPTCIISYYNIKDKSCIDARTISKRLYNKIHDHYFEVKKKIF
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