Scaffold Ga0209190

Basic Information
Taxon OID	3300027736 Open in IMG/M
Scaffold ID	Ga0209190_1003074 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027736 Open in IMG/M

Scaffold ID

Ga0209190_1003074 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11092
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (27.78%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

11092

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (27.78%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022372	Metagenome / Metatranscriptome	214	Y
F050981	Metagenome / Metatranscriptome	144	N
F078382	Metagenome / Metatranscriptome	116	N
F083886	Metagenome / Metatranscriptome	112	N
F100656	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100307410	F050981	GGAG	MRWLAIICLSASSVWAQITDDELSKISKEEIVLTIKHLQKLTAESIAAADKAIASEARVQANLVDATDALMDSQNQLLKVDQDIRNLQAQADEQTRIAVGAKADAIKAQRLADHRGNLLGWLGAGLLCILCLRLTSILPPPYGFLLPVAAIPAGYWLARLLL
Ga0209190_100307411	F078382	AGG	MTLRSAIRQTLALIVVVLSIFLSRTLWVTIGGLYVVWIVHWSDVATLYTLDNAAQIQSFTQLALCRYGLIGSIVLGYLGFTKGSTGVAGYVIDKLNPKDS
Ga0209190_10030747	F022372	N/A	MSTTITIDVAFLTEDQRDAATLLFARSGGWQATVDGEPNPISAEDYGVTMIANYLRQRVSEQSAYDAQIAAAQEVADLLAGVTVTTPPDFPTPPIITPV
Ga0209190_10030748	F083886	N/A	MLRNEIFGDLWRGSVGMAGSWLAVISSTHEDIDSIAKTAGMILGCLASLAMFISLCQRIYHNWQTRKWEGVIFKQTDEDLKK
Ga0209190_10030749	F100656	AGCAG	MKTLKNSLLLLSLVTLTACEHNRPKPSPAIVSVAQAKASTTAASTAVRSAIEESNGTMIQIQKIRTAQDRVDAKSVLILKWLEFQR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209190_1003074

Overview

Ecosystem & Geography

Associated Families

Sequences