NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1003298

Scaffold Ga0209190_1003298


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1003298 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10734
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (72.22%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048283Metagenome / Metatranscriptome148N
F050338Metagenome / Metatranscriptome145N
F063657Metagenome / Metatranscriptome129N
F072296Metagenome121N
F085612Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100329815F050338GGAGMPLIDGFGLPARLVVWIRAQPCGVTMQVNTEDVLEELRTIYPPRPDLGSPVELWDAIRQADAEDEELGNANHWRSFVLVAWAFEHGDSVTGGVPRTIRFVCPRSTWEVAL
Ga0209190_10032982F085612N/AVNVTDPEYDGEIVTLGIRIFEGVADDLPRWQPWIAGETAHCVASLYRHGANHFRPTSVTRGSTRGVWEIILRDGRYAVVPWGGGRDEETDLGTDRAVALAHLEQRLATLTVSESRGQLELGL
Ga0209190_10032985F048283N/AMAIATWHHVGQTTKGEQVEIEVTYTPALIGVGPEVGDDVNASCDAFEVQVHMELSTSYPDADITVTRDHGHLADLSVVTHGFVDQRGVLTTRQAVWSDVWDMISPYGRYRRPVRGGILQASVPVVVVRPERRPDVFTMIVDDASGNSVIECDEDEARAVMRSGFGVMA
Ga0209190_10032986F063657GGAGMDDVVTEVSVTGAVTTDGRLRFRSPLDVEAWAHDHLLARLAWEYLMDGRDNGVPRETDQALERAIRLIPGAVRRTMLGRMSDGYYLTWAVYGLDDKRQVEFLDRAWHEFLALIARGDG
Ga0209190_10032989F072296AGGMMALQRPQRTSLPAFQRVAGGGEKIDHEITHLCGHTAVIQVYAGSNPDNSRWVQEQKLTDCWTCFREKMAESDQASVDAGKRVALDGGPKQVPWAQSVRQSRASEMRTWLESVTAVGAGAVKAGRLTQAEFEAGIQDVRSAFSDLMMGCEFSDEDYDHSGYAKWWIDSRKDPLDGIIARLLPDRDILGTGVFTRLSDDGWTPAVDDATLLPVEVEPEPVQRTATPLPGTAPEPFNPHARGKGRLPVKVVAGPAAGQREREVAELDLDDSPF

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